TLMEM SNP Database & Platform Architecture v1.0-PQC

Government Education 504/LEA Platform & Gov-LLM Integration Framework

Complete Architectural Mindmap

Comprehensive structural representation of the TLMEM system, data pipelines, security enclave, and legal generation engines.

======================================================================================================================== TLMEM SNP DATABASE & GOV-LLM INTEGRATION ENGINE ======================================================================================================================== │ ┌─────────────────────────────────────────────┼─────────────────────────────────────────────┐ ▼ ▼ ▼ ┌─────────────────────────┐ ┌─────────────────────────┐ ┌─────────────────────────┐ │ Phase 0: Architecture │ │ Phase 1: Ingestion │ │ Phase 2: Security Pod │ └────────┬────────────────┘ └────────┬────────────────┘ └────────┬────────────────┘ │ │ │ ├─► Core Tiering Framework ├─► Public Catalogs ├─► GINA / HIPAA Isolation │ ├─► Tier 1: Synaptic/Dopamine │ ├─► dbSNP / ClinVar │ ├─► Physical Segregation │ ├─► Tier 2: Demontis 2023 GWAS │ ├─► PGC ADHD Meta-Analysis │ └─► FERPA Bridge Decoupling │ ├─► Tier 3: Psychometrics │ └─► PsychENCODE eQTL │ │ └─► Tier 4: Polygenic Scores │ ├─► NIST PQC Enclave │ ├─► Variant Prioritization │ ├─► ML-KEM (Kyber) ├─► Legal Trigger Mapping │ ├─► COMT, BDNF, SLC6A2 │ └─► ML-DSA (Dilithium) │ ├─► Medically Determinable (MDI) │ ├─► DAT1, DRD4, SNAP25 │ │ ├─► Rebuttal of Willfulness │ └─► ST3GAL3, MEF2C, SORCS3 │ └─► Immutable DAG Audit │ └─► 504 / § 1983 / SSA RFC │ ├─► SHA3-512 Ledger │ └─► Quality Control (QC) └─► Microsecond Timestamps └─► Target Capacity ├─► HWE Filtering (p > 1e-6) └─► 5k - 50k SNP Reference Library └─► LD Pruning (r² < 0.1) │ ┌─────────────────────────────────────────────┼─────────────────────────────────────────────┐ ▼ ▼ ▼ ┌─────────────────────────┐ ┌─────────────────────────┐ ┌─────────────────────────┐ │ Phase 3: ETL Pipeline │ │ Phase 4: Engine Modules │ │ Phase 5 & 6: Deployment │ └────────┬────────────────┘ └────────┬────────────────┘ └────────┬────────────────┘ │ │ │ ├─► VCF / Microarray Parsing ├─► 504 Accommodation Engine ├─► Validation & Testing │ └─► ANNOVAR / VEP Annotation │ ├─► Accommodation Rules Matrix │ ├─► PQC Unit Tests │ │ └─► Time Multipliers (1.5x-2.0x) │ └─► Penetration Testing ├─► Psychometric Screener Cross-Check │ │ │ ├─► WCST Perseveration Matching ├─► Gov-LLM Brief Generator └─► Continuous Maintenance │ └─► IVA-CPT Inattention Flag │ ├─► § 1983 Counts I-III ├─► Quarterly GWAS Ingestion │ │ ├─► Monell / Bad-Faith Claims └─► Public Ref Release └─► ADHD-PRS Calculator Engine │ └─► SSA RFC Form 4734-BK └─► Ancestry PC Residualization │ └─► Cascade Visualizer └─► Gene ➔ Circuit ➔ Claim ========================================================================================================================

Technical TODO & Implementation Roadmap

Phase 0: Planning & Scope Definition (Weeks 1–2) ▼
  • Task 0.1: Finalize multi-tier taxonomy for genetic variants based on evidence strength.
  • Task 0.2: Establish legal mapping rules linking neurobiological phenotypes to statutory standards (§ 504, ADA Title II, 42 U.S.C. § 1983, SSA RFC).
  • Task 0.3: Draft System Security Plan (SSP) for GINA/HIPAA enclave isolation from school FERPA databases.
  • Task 0.4: Define NIST Post-Quantum Cryptography (PQC) integration targets for tokenization and signing.
Phase 1: Data Sourcing, Curation & Quality Control (Weeks 3–6) ▼
  • Task 1.1: Ingest dbSNP, ClinVar, GWAS Catalog, and PGC ADHD summary statistics (Demontis et al. 2023).
  • Task 1.2: Extract tissue-specific eQTL data from PsychENCODE and GTEx (Focus: DLPFC, ACC, Striatum).
  • Task 1.3: Perform LD pruning ($r^2 < 0.1$) and Hardy-Weinberg equilibrium filtering ($p > 10^{-6}$).
  • Task 1.4: Curate functional impairment tags and link each variant to specific psychometric battery deficits.
Phase 2: Database Schema & PQC Vault Engineering (Weeks 7–8) ▼
  • Task 2.1: Implement Drizzle ORM schema for PostgreSQL / TiDB (`snpReferenceLibrary`, `studentGeneticVault`).
  • Task 2.2: Integrate NIST ML-KEM (Kyber) for secure key encapsulation during genetic data transit.
  • Task 2.3: Integrate NIST ML-DSA (Dilithium) for signing all database access actions and consent records.
  • Task 2.4: Deploy immutable DAG audit logging ledger using SHA3-512 hashes.
Phase 3: Automated Ingestion Pipeline & PRS Calculator (Weeks 9–11) ▼
  • Task 3.1: Build automated ETL pipeline to process VCF and 23andMe microarray formats using VEP annotation.
  • Task 3.2: Develop ADHD Polygenic Risk Score (ADHD-PRS) computation engine with ancestry PC residualization.
  • Task 3.3: Create automated cross-validation module aligning genetic calls with ASRS v1.1 and CADI screeners.
Phase 4: Platform Engine & Gov-LLM Brief Integration (Weeks 12–14) ▼
  • Task 4.1: Implement 504 Plan Accommodation Generator mapping specific genotypes to classroom modifications.
  • Task 4.2: Build TLMEM Cascade engine converting genomic entries into multi-tiered evidence statements.
  • Task 4.3: Integrate Gov-LLM automated brief generator to draft legal motions under 42 U.S.C. § 1983 and SSA Appeals.
Phase 5 & 6: Testing, Compliance & Continuous Maintenance (Weeks 15–16+) ▼
  • Task 5.1: Execute penetration testing against GINA enclave and verify zero-knowledge property of token map.
  • Task 5.2: Perform clinical validation by benchmarking model prediction against objective WCST/IVA-CPT datasets.
  • Task 6.1: Establish quarterly automated ingestion of new GWAS Catalog updates and eQTL datasets.

Curated Multi-Tier SNP Catalog

Tier Gene / RSID Allele / Genotype Molecular & Neurocircuit Effect Psychometric Impact Statutory Legal Claim
Tier 1 COMT
rs4680
Val158Met
(Val/Val)
40% increase in dopamine degradation; DLPFC hypoactivation under high stress. High WCST perseverative errors; N-Back degradation. Rebuts "willfulness"; triggers 1.5–2.0× extended test time under § 504.
Tier 1 BDNF
rs6265
Val66Met
(Met/Met)
Attenuated activity-dependent neurotrophin secretion; reduced hippocampal plasticity. Verbal memory consolidation failure; learning acquisition decay. Mandates procedural checklists, non-punitive error correction, multi-day chunking.
Tier 1 SLC6A2
rs28386840
Promoter Variant
(A-Allele)
Altered norepinephrine reuptake in LC projections to prefrontal and cingulate cortex. IVA-CPT sustained attention decay; high omission errors. Establishes MDI under SSA RFC; mandates movement breaks and sensory reduction.
Tier 1 SLC6A3
rs27072
3'-UTR VNTR
(10R/10R)
Elevated striatal dopamine transporter expression; rapid synaptic clearance. High commission errors (impulsivity); SST inhibition failure. Rebuts disciplinary suspensions; mandates Positive Behavior Support Plans (PBSP).
Tier 2 ST3GAL3
rs4987117
Intronic Variant
(G-Allele)
GWAS significant (Demontis 2023); regulates brain ganglioside sialylation. Global processing speed impairment on Symbol Search. Supports broader neurodevelopmental MDI finding in SSA disability claims.
Tier 2 MEF2C
rs1906252
Upstream Intergenic
(T-Allele)
Disrupts activity-dependent synaptic pruning during prefrontal development. Executive dysfunction across spatial working memory tasks. Supports § 1983 Monell claim establishing systemic lack of accommodations.
Tier 3 SNAP25
rs362990
3'-UTR Variant
(A-Allele)
Altered SNARE complex assembly and presynaptic exocytosis kinetics. Elevated Stroop interference effect; cognitive overload. Triggers single-concept presentation accommodations and oral exam exemptions.
Tier 4 ADRA2A
rs1800544
Promoter Variant
(C-Allele)
Protective variant; enhances alpha-2A adrenoceptor postsynaptic signaling. Buffering against stress-induced executive collapse. Used in PRS calculations to establish overall resilience and modifier indices.

Database Schema & Cryptographic Enclave Definition

Drizzle ORM TypeScript definition incorporating NIST ML-KEM and ML-DSA post-quantum protections.

import { pgTable, serial, text, varchar, integer, doublePrecision, boolean, timestamp, primaryKey, index } from 'drizzle-orm/pg-core';

// Reference Library Table (Public/Non-PII)
export const snpReferenceLibrary = pgTable('snp_reference_library', {
  rsid: varchar('rsid', { length: 32 }).primaryKey(),
  geneSymbol: varchar('gene_symbol', { length: 32 }).notNull(),
  tierLevel: integer('tier_level').notNull(),
  pathwayCategory: text('pathway_category').notNull(),
  psychometricImpact: text('psychometric_impact').notNull(),
  statutoryClaimMapping: text('statutory_claim_mapping').notNull(),
});

// Cryptographically Segregated Student Vault (GINA/HIPAA Enclave)
export const studentGeneticVault = pgTable('student_genetic_vault', {
  genomicToken: varchar('genomic_token', { length: 64 }).primaryKey(), // SHA3-256 Pseudonym
  encryptedStudentRef: text('encrypted_student_ref').notNull(), // AES-256-GCM Ciphertext
  pqcKyberPublicKey: text('pqc_kyber_public_key').notNull(), // NIST ML-KEM Key
  pqcDilithiumSignature: text('pqc_dilithium_signature').notNull(), // NIST ML-DSA Signature
  consentActive: boolean('consent_active').notNull().default(false),
  createdAt: timestamp('created_at', { withTimezone: true }).defaultNow().notNull(),
});

// Immutable Audit Log Ledger (DAG Structure)
export const immutableAuditLog = pgTable('immutable_audit_log', {
  logId: serial('log_id').primaryKey(),
  nodeHash: varchar('node_hash', { length: 128 }).notNull().unique(), // SHA3-512 Hash
  parentHash: varchar('parent_hash', { length: 128 }).notNull(), // Ancestor Hash
  actionType: varchar('action_type', { length: 64 }).notNull(),
  timestampMs: integer('timestamp_ms').notNull(),
});